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In situ Measurement of Gas Diffusion Coefficient in Soils1

Lai, Sung-Ho, Tiedje, James M., Erickson, A. Earl

Journal:

Soil Science Society of America Journal

Année:

1976

Langue:

english

Fichier:

PDF, 148 KB

english, 1976

High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant

Karkman, Antti, Johnson, Timothy A., Lyra, Christina, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko

Journal:

FEMS Microbiology Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 763 KB

english, 2016

Intercropped Silviculture Systems, a Key to Achieving Soil Fungal Community Management in Eucalyptus Plantations

Rachid, Caio T. C. C., Balieiro, Fabiano C., Fonseca, Eduardo S., Peixoto, Raquel Silva, Chaer, Guilherme M., Tiedje, James M., Rosado, Alexandre S., Yurkov, Andrey M

Journal:

PLoS ONE

Année:

2015

Langue:

english

Fichier:

PDF, 624 KB

english, 2015

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

Penton, C. Ryan, Gupta, Vadakattu V. S. R., Yu, Julian, Tiedje, James M.

Journal:

Frontiers in Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2016

Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway

Aviaja A. Hansen, Rodney A. Herbert, Karina Mikkelsen, Lars Liengård Jensen, Tommy Kristoffersen, James M. Tiedje, Bente Aa. Lomstein, Kai W. Finster

Journal:

Environmental Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 200 KB

english, 2007

Frequent freeze–thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment

Blaž Stres, Laurent Philippot, Jadran Faganeli, James M. Tiedje

Journal:

FEMS Microbiology Ecology

Année:

2010

Langue:

english

Fichier:

PDF, 234 KB

english, 2010

Direct Measurement of Oxygen Profiles and Denitrification Rates in Soil Aggregates1

Sexstone, Alan J., Revsbech, Niels Peter, Parkin, Timothy B., Tiedje, James M.

Journal:

Soil Science Society of America Journal

Année:

1985

Langue:

english

Fichier:

PDF, 237 KB

english, 1985

Soil fungal and bacterial responses to conversion of open land to short rotation woody biomass crops

Xue, Chao, Penton, C. Ryan, Zhang, Bangzhou, Zhao, Mengxin, Rothstein, David E., Mladenoff, David J., Forrester, Jodi A., Shen, Qirong, Tiedje, James M.

Journal:

GCB Bioenergy

Année:

2015

Langue:

english

Fichier:

PDF, 886 KB

english, 2015

Virulence factor activity relationships (VFARs): a bioinformatics perspective

Waseem, Hassan, Williams, Maggie R., Stedtfeld, Tiffany, Chai, Benli, Stedtfeld, Robert D., Cole, James R., Tiedje, James M., Hashsham, Syed A.

Journal:

Environmental Science: Processes & Impacts

Année:

2017

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2017

Effect of Sugarcane Burning or Green Harvest Methods on the Brazilian Cerrado Soil Bacterial Community Structure

Rachid, Caio T. C. C., Santos, Adriana L., Piccolo, Marisa C., Balieiro, Fabiano C., Coutinho, Heitor L. C., Peixoto, Raquel S., Tiedje, James M., Rosado, Alexandre S., Berg, Gabriele

Journal:

PLoS ONE

Année:

2013

Langue:

english

Fichier:

PDF, 767 KB

english, 2013

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes

Kroeger, Marie E., Delmont, Tom O., Eren, A. M., Meyer, Kyle M., Guo, Jiarong, Khan, Kiran, Rodrigues, Jorge L. M., Bohannan, Brendan J. M., Tringe, Susannah G., Borges, Clovis D., Tiedje, James M., T

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2018

Soil Bacterial Community Shift Correlated with Change from Forest to Pasture Vegetation in a Tropical Soil

NuÌsslein, Klaus, Tiedje, James M.

Journal:

Applied and Environmental Microbiology

Année:

1999

Fichier:

PDF, 1.66 MB

1999

Competition between sulfate-reducing and methanogenic bacteria for H2under resting and growing conditions

Joseph A. Robinson, James M. Tiedje

Journal:

Archives of Microbiology

Année:

1984

Langue:

english

Fichier:

PDF, 804 KB

english, 1984

Characterization ofExiguobacteriumisolates from the Siberian permafrost. Description ofExiguobacterium sibiricumsp. nov.

Debora Frigi Rodrigues, Johan Goris, Tatiana Vishnivetskaya, David Gilichinsky, Michael F. Thomashow, James M. Tiedje

Journal:

Extremophiles

Année:

2006

Langue:

english

Fichier:

PDF, 370 KB

english, 2006

A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips

Farhan Ahmad, Gregoire Seyrig, Dieter M. Tourlousse, Robert D. Stedtfeld, James M. Tiedje, Syed A. Hashsham

Journal:

Biomedical Microdevices

Année:

2011

Langue:

english

Fichier:

PDF, 343 KB

english, 2011

Changes in land use alter the structure of bacterial communities in Western Amazon soils

da C Jesus, Ederson, Marsh, Terence L, Tiedje, James M, de S Moreira, Fatima M

Journal:

The ISME Journal

Année:

2009

Langue:

english

Fichier:

PDF, 399 KB

english, 2009

Changes in land use alter the structure of bacterial communities in Western Amazon soils

da C Jesus, Ederson, Marsh, Terence L, Tiedje, James M, de S Moreira, Fatima M

Journal:

The ISME Journal

Année:

2009

Fichier:

PDF, 34 KB

2009

Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica

Teixeira, Lia C R S, Peixoto, Raquel S, Cury, Juliano C, Sul, Woo Jun, Pellizari, Vivian H, Tiedje, James, Rosado, Alexandre S

Journal:

The ISME Journal

Année:

2010

Langue:

english

Fichier:

PDF, 859 KB

english, 2010

Shewanella—the environmentally versatile genome

Tiedje, James M.

Journal:

Nature Biotechnology

Année:

2002

Langue:

english

Fichier:

PDF, 182 KB

english, 2002

TerraGenome: a consortium for the sequencing of a soil metagenome

Vogel, Timothy M., Simonet, Pascal, Jansson, Janet K., Hirsch, Penny R., Tiedje, James M., van Elsas, Jan Dirk, Bailey, Mark J., Nalin, Renaud, Philippot, Laurent

Journal:

Nature Reviews Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 122 KB

english, 2009

Advantages of the metagenomic approach for soil exploration: reply from Vogel et al.

Vogel, Timothy M., Hirsch, Penny R., Simonet, Pascal, Jansson, Janet K., Tiedje, James M., van Elsas, Jan Dirk, Nalin, Renaud, Philippot, Laurent, Bailey, Mark J.

Journal:

Nature Reviews Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 103 KB

english, 2009

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

Rosenzweig, Noah, Tiedje, James M., Quensen, John F., Meng, Qingxiao, Hao, Jianjun J.

Journal:

Plant Disease

Année:

2012

Langue:

english

Fichier:

PDF, 329 KB

english, 2012

Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils

Jizhong Zhou, Beicheng Xia, Heshu Huang, David S. Treves, Loren J. Hauser, Richard J. Mural, Anthony V. Palumbo, James M. Tiedje

Journal:

Soil Biology and Biochemistry

Année:

2003

Langue:

english

Fichier:

PDF, 284 KB

english, 2003

A polymer microfluidic chip for quantitative detection of multiple water- and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification

Tourlousse, Dieter M., Ahmad, Farhan, Stedtfeld, Robert D., Seyrig, Gregoire, Tiedje, James M., Hashsham, Syed A.

Journal:

Biomedical Microdevices

Année:

2012

Langue:

english

Fichier:

PDF, 451 KB

english, 2012

Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties

Chao Liang, Ederson da C. Jesus, David S. Duncan, Randall D. Jackson, James M. Tiedje, Teri C. Balser

Journal:

Applied Soil Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 865 KB

english, 2012

Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains

Tatiana A. Vishnivetskaya, Robin Siletzky, Natalie Jefferies, James M. Tiedje, Sophia Kathariou

Journal:

Cryobiology

Année:

2007

Langue:

english

Fichier:

PDF, 380 KB

english, 2007

Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil

Jorge L.M Rodrigues, Michael R Aiello, John W Urbance, Tamara V Tsoi, James M Tiedje

Journal:

Journal of Microbiological Methods

Année:

2002

Langue:

english

Fichier:

PDF, 186 KB

english, 2002

Opening the black box of soil microbial diversity

James M Tiedje, Stella Asuming-Brempong, Klaus Nüsslein, Terry L Marsh, Shannon J Flynn

Journal:

Applied Soil Ecology

Année:

1999

Langue:

english

Fichier:

PDF, 1.47 MB

english, 1999

Application of a soil core method to investigate the effect of oxygen concentration on denitrification

Timothy B. Parkin, James M. Tiedje

Journal:

Soil Biology and Biochemistry

Année:

1984

Langue:

english

Fichier:

PDF, 458 KB

english, 1984

A gas-flow soil core method to measure field denitrification rates

Timothy B. Parkin, Heinrich F. Kaspar, Alan J. Sexstone, James M. Tiedje

Journal:

Soil Biology and Biochemistry

Année:

1984

Langue:

english

Fichier:

PDF, 903 KB

english, 1984

Bacterial Community in Ancient Siberian Permafrost as Characterized by Culture and Culture-Independent Methods

Vishnivetskaya, Tatiana A., Petrova, Maya A., Urbance, John, Ponder, Monica, Moyer, Craig L., Gilichinsky, David A., Tiedje, James M.

Journal:

Astrobiology

Année:

2006

Langue:

english

Fichier:

PDF, 326 KB

english, 2006

Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon

Sul, Woo Jun, Asuming-Brempong, Stella, Wang, Qiong, Tourlousse, Dieter M., Penton, C. Ryan, Deng, Ye, Rodrigues, Jorge L.M., Adiku, Samuel G.K., Jones, James W., Zhou, Jizhong, Cole, James R., Tiedje

Journal:

Soil Biology and Biochemistry

Année:

2013

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2013

Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA

Liang, Chao, Duncan, David S., Balser, Teri C., Tiedje, James M., Jackson, Randall D.

Journal:

Soil Biology and Biochemistry

Année:

2013

Langue:

english

Fichier:

PDF, 183 KB

english, 2013

Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution

Alban Ramette and James M. Tiedje

Journal:

Microbial Ecology

Année:

2007

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2007

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

Paula, Fabiana S., Rodrigues, Jorge L. M., Zhou, Jizhong, Wu, Liyou, Mueller, Rebecca C., Mirza, Babur S., Bohannan, Brendan J. M., Nüsslein, Klaus, Deng, Ye, Tiedje, James M., Pellizari, Vivian H.

Journal:

Molecular Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 706 KB

english, 2014

Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing

Leigh, Mary Beth, Wu, Wei-Min, Cardenas, Erick, Uhlik, Ondrej, Carroll, Sue, Gentry, Terry, Marsh, Terence L., Zhou, Jizhong, Jardine, Philip, Criddle, Craig S., Tiedje, James M.

Journal:

Frontiers of Environmental Science & Engineering

Année:

2015

Langue:

english

Fichier:

PDF, 390 KB

english, 2015

Degradation of alachlor by a soil fungus, Chaetomium globosum

Tiedje, James M., Hagedorn, Myrna L.

Journal:

Journal of Agricultural and Food Chemistry

Année:

1975

Langue:

english

Fichier:

PDF, 649 KB

english, 1975

A morphological study of anaerobic bacteria from the hypolimnia of two Michigan lakes

Caldwell, Douglas E., Tiedje, James M.

Journal:

Canadian Journal of Microbiology

Année:

1975

Langue:

english

Fichier:

PDF, 2.59 MB

english, 1975

Closed cycle chiller as a low cost alternative to liquid nitrogen in molecular beam epitaxy

Lewis, Ryan B., Mackenzie, James A., Tiedje, Thomas, Beaton, Daniel A., Masnadi-Shirazi, Mostafa, Bahrami-Yekta, Vahid, Watkins, Keelan P., Mooney, Patricia M.

Journal:

Journal of Vacuum Science & Technology B Microelectronics and Nanometer Structures

Année:

2013

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2013

Spectral Tools for Dynamic Tonality and Audio Morphing

Sethares, William A., Milne, Andrew J., Tiedje, Stefan, Prechtl, Anthony, Plamondon, James

Journal:

Computer Music Journal

Année:

2009

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2009

Ammonia oxidation coupled to CO₂ fixation by archaea and bacteria in an agricultural soil

Jennifer Pratscher, Marc G. Dumont, Ralf Conrad and James M. Tiedje

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

Spectral Tools for Dynamic Tonality and Audio Morphing

William A. Sethares, Andrew J. Milne, Stefan Tiedje, Anthony Prechtl and James Plamondon

Journal:

Computer Music Journal

Année:

2009

Langue:

english

Fichier:

PDF, 2.87 MB

english, 2009

ARGs-OAP: Online Analysis Pipeline for Anti-biotic Resistance Genes Detection from Meta-genomic Data Using an Integrated Structured ARG-database

Yang, Ying, Jiang, Xiaotao, Cai, Benli, Ma, Liping, Li, Bing, Zhang, Anni, Cole, James R., Tiedje, James M., Zhang, Tong

Journal:

Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 580 KB

english, 2016

Characterization of tet (Y)-carrying LowGC plasmids exogenously captured from cow manure at a conventional dairy farm

Kyselková, Martina, Chrudimský, Tomáš, Husník, Filip, Chroňáková, Alica, Heuer, Holger, Smalla, Kornelia, Elhottová, Dana, Tiedje, James

Journal:

FEMS Microbiology Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 6.74 MB

english, 2016

Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria

de Carvalho, Teotonio Soares, da Conceição Jesus, Ederson, Barlow, Jos, Gardner, Toby A, Soares, Isaac Carvalho, Tiedje, James M, de Souza Moreira, Fatima Maria

Journal:

Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 679 KB

english, 2016

Methodologies for probing the metatranscriptome of grassland soil

Garoutte, Aaron, Cardenas, Erick, Tiedje, James, Howe, Adina

Journal:

Journal of Microbiological Methods

Année:

2016

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2016

Strategies to improve reference databases for soil microbiomes

Choi, Jinlyung, Yang, Fan, Stepanauskas, Ramunas, Cardenas, Erick, Garoutte, Aaron, Williams, Ryan, Flater, Jared, Tiedje, James M, Hofmockel, Kirsten S, Gelder, Brian, Howe, Adina

Journal:

The ISME Journal

Année:

2017

Langue:

english

Fichier:

PDF, 886 KB

english, 2017

How stable is stable? Function versus community composition

Fern??ndez, Ana, Huang, Suiying, Seston, Sherry, Xing, Jian, Hickey, Robert, Criddle, Craig, Tiedje, James

Journal:

Applied and Environmental Microbiology

Année:

1999

Langue:

english

Fichier:

PDF, 1.02 MB

english, 1999

Fungal Community Structure in Disease Suppressive Soils Assessed by 28S LSU Gene Sequencing

Penton, C. Ryan, Gupta, V. V. S. R., Tiedje, James M., Neate, Stephen M., Ophel-Keller, Kathy, Gillings, Michael, Harvey, Paul, Pham, Amanda, Roget, David K., Vinatzer, Boris Alexander

Journal:

PLoS ONE

Année:

2014

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2014

Soil depth and crop determinants of bacterial communities under ten biofuel cropping systems

Zhang, Bangzhou, Penton, C. Ryan, Xue, Chao, Quensen, John F., Roley, Sarah S., Guo, Jiarong, Garoutte, Aaron, Zheng, Tianling, Tiedje, James M.

Journal:

Soil Biology and Biochemistry

Année:

2017

Langue:

english

Fichier:

PDF, 3.85 MB

english, 2017